import numpy as np def kmeans(X, k, maxIt):
numPoints, numDim = X.shape
dataSet = np.zeros((numPoints, numDim + 1))
dataSet[:, :-1] = X centroids = dataSet[np.random.randint(numPoints, size = k), :] centroids[:, -1] = range(1, k +1)
iterations = 0
oldCentroids = None while not shouldStop(oldCentroids, centroids, iterations, maxIt):
print ("iteration: \n", iterations)
print ("dataSet: \n", dataSet)
print ("centroids: \n", centroids) oldCentroids = np.copy(centroids)
iterations += 1 updateLabels(dataSet, centroids) centroids = getCentroids(dataSet, k)
return dataSet def shouldStop(oldCentroids, centroids, iterations, maxIt):
if iterations > maxIt:
return True
return np.array_equal(oldCentroids, centroids)
def updateLabels(dataSet, centroids): numPoints, numDim = dataSet.shape
for i in range(0, numPoints):
dataSet[i, -1] = getLabelFromClosestCentroid(dataSet[i, :-1], centroids) def getLabelFromClosestCentroid(dataSetRow, centroids):
label = centroids[0, -1];
minDist = np.linalg.norm(dataSetRow - centroids[0, :-1])
for i in range(1 , centroids.shape[0]):
dist = np.linalg.norm(dataSetRow - centroids[i, :-1])
if dist < minDist:
minDist = dist
label = centroids[i, -1]
print ("minDist:", minDist)
return label def getCentroids(dataSet, k):
result = np.zeros((k, dataSet.shape[1]))
for i in range(1, k + 1):
oneCluster = dataSet[dataSet[:, -1] == i, :-1] )
result[i - 1, :-1] = np.mean(oneCluster, axis = 0)
result[i - 1, -1] = i return result
x1 = np.array([1, 1])
x2 = np.array([2, 1])
x3 = np.array([4, 3])
x4 = np.array([5, 4])
testX = np.vstack((x1, x2, x3, x4))
result = kmeans(testX, 2, 10)
print ("final result:")
print (result)