使用conda安装vep

conda install ensembl-vep vep

报错

Compress::Raw::Zlib version 2.201 required--this is only version 2.105 at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

BEGIN failed--compilation aborted at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.


报错解决

conda update -c conda-forge perl-compress-raw-zlib

参考:https://github.com/Ensembl/ensembl-vep/issues/1378


再次vep 

04-17 08:37