IJ.close()-在ImageJ/FIJI中编写python脚本

问题描述

我是python/scripting的新手，遇到了问题.我在斐济写了以下内容(脚本的缩短版本在下面...)

I'm exceptionally new to python/scripting and I'm having a problem. I'm writing the following in Fiji (shortened version of the script is below...)

from ij import IJ, ImagePlus
from java.lang import Runtime, Runnable

import os

filepaths = []

for folder, subs, files in os.walk('location/of/files/'):
    for filename in files:
        #the next part stops it appending DS files
        if not filename.startswith('.'):
            filepaths.append(os.path.abspath(os.path.join(folder, filename,)))   

for i in filepaths:
    IJ.open(i);
    IJ.close();

基本上，我想打开图像，进行处理，然后使用IJ.close()关闭处理后的图像.但是，它给出了以下错误:

Basically I want to open an image, do stuff, and then close the processed image using IJ.close(). However it gives the following error:

AttributeError: type object 'ij.IJ' has no attribute 'close'

有人知道如何解决这个问题吗?

Any idea how to get around this?

谢谢！

推荐答案

IJ类没有close()方法.您可能要调用ImagePlus的close()方法，该方法是图像对象本身的类.

The IJ class does not have a close() method. You probably want to call the close() method of ImagePlus, which is the class for the image objects themselves.

尝试类似的东西:

IJ.open(i)
imp = IJ.getImage()
imp.getProcessor().setf(100, 100, 3.14159) # or whatever
IJ.save(imp, "/path/to/myShinyModifiedImage.tif")
imp.close()

如果需要对多平面图像的多个切片进行操作，另请参见切片上方的循环"模板("Python"菜单="nofollow">脚本编辑器).

If you need to operate over multiple slices of a multi-plane image, see also the "Loop over slices" template (Templates > Python menu of the Script Editor).

还请注意，Jython在语句中没有结尾的分号.

Note also that Jython does not have trailing semicolons on statements.

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