python - Pandas HDFStore-如何重新打开？

我使用以下方法创建了一个文件:

store = pd.HDFStore('/home/.../data.h5')

并使用以下方式存储了一些表:

store['firstSet'] = df1
store.close()

我关闭了python，然后在一个新的环境中重新打开。

如何重新打开此文件？

当我去:

store = pd.HDFStore('/home/.../data.h5')

我收到以下错误。

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/misc/apps/linux/python-2.6.1/lib/python2.6/site-packages/pandas-0.10.0-py2.6-linux-x86_64.egg/pandas/io/pytables.py", line 207, in __init__
    self.open(mode=mode, warn=False)
  File "/misc/apps/linux/python-2.6.1/lib/python2.6/site-packages/pandas-0.10.0-py2.6-linux-x86_64.egg/pandas/io/pytables.py", line 302, in open
    self.handle = _tables().openFile(self.path, self.mode)
  File "/apps/linux/python-2.6.1/lib/python2.6/site-packages/tables/file.py", line 230, in openFile
    return File(filename, mode, title, rootUEP, filters, **kwargs)
  File "/apps/linux/python-2.6.1/lib/python2.6/site-packages/tables/file.py", line 495, in __init__
    self._g_new(filename, mode, **params)
  File "hdf5Extension.pyx", line 317, in tables.hdf5Extension.File._g_new (tables/hdf5Extension.c:3039)
tables.exceptions.HDF5ExtError: HDF5 error back trace

  File "H5F.c", line 1582, in H5Fopen
    unable to open file
  File "H5F.c", line 1373, in H5F_open
    unable to read superblock
  File "H5Fsuper.c", line 334, in H5F_super_read
    unable to find file signature
  File "H5Fsuper.c", line 155, in H5F_locate_signature
    unable to find a valid file signature

End of HDF5 error back trace

Unable to open/create file '/home/.../data.h5'

我在这里做错了什么？谢谢。

最佳答案

在我看来，以下方法最有效:

df = pd.DataFrame(...)

"write"
with pd.HDFStore('test.h5',  mode='w') as store:
    store.append('df', df, data_columns= df.columns, format='table')

"read"
with pd.HDFStore('test.h5',  mode='r') as newstore:
    df_restored = newstore.select('df')

关于python - Pandas HDFStore-如何重新打开？，我们在Stack Overflow上找到一个类似的问题：https://stackoverflow.com/questions/14591855/