我有一个小脚本令我非常满意,可以从剪贴板中读取一个或多个书目参考,并从Google Scholar中获取学术论文的信息,然后将其输入SciHub以获取pdf。由于某种原因,它停止工作了,我花了很长时间尝试找出原因。

测试表明,该程序的Google(scholarly.py)部分运行正常,这是SciHub部分所引起的。

有任何想法吗?

这是一个示例参考:
Appleyard,S.J.,Angeloni,J.和Watkins,R.(2006年),澳大利亚干旱地区城市干旱地区人口中砷含量高的地下水。应用地球化学21(1),83-97。

    '''Program to automatically find and download items from a bibliography or references list.
This program uses the 'scihub' website to obtain the full-text paper where
available, if no entry is found the paper is ignored and the failed downloads
are listed at the end'''

import scholarly
import win32clipboard
import urllib
import urllib2
import webbrowser
import re

'''Select and then copy the bibliography entries you want to download the
papers for, python reads the clipboard'''
win32clipboard.OpenClipboard()
c = win32clipboard.GetClipboardData()
win32clipboard.EmptyClipboard()

'''Cleans up the text. removes end lines and double spaces etc.'''
c = c.replace('\n', ' ')
c = c.replace('\r', ' ')
while c.find('  ') != -1:
    c = c.replace('  ', ' ')
win32clipboard.SetClipboardText(c)
win32clipboard.CloseClipboard()
print "Working..."

'''bit of regex to extract the title of the paper,
IMPORTANT: bibliography has to be in
author date format or you will need to revise this,
at the moment it looks for year date in brackets, then copies all the text until it
reaches a full-stop, assuming that this is the paper title. If it is not, it
will either fail or will be using inappropriate search terms.'''


paper_info= re.findall(r"(\d{4}[a-z]*)([). ]+)([ \"])+([\w\s_():,-]*)(.)",c)
print "Analysing titles"
print "The following titles found:"
print "*************************"
list_of_titles= list()
for i in paper_info:
    print '%s...' % (i[3][:50])
    Paper_title=str(i[3])
    list_of_titles.append(Paper_title)

failed=list()
for title in list_of_titles:
    try:
        search_query = scholarly.search_pubs_query(title)

        info= (next(search_query))

        print "Querying Google Scholar"
        print "**********************"
        print "Looking up paper title:"
        print "**********************"
        print title
        print "**********************"

        url=info.bib['url']
        print "Journal URL found "
        print url
        #url=next(search_query)
        print "Sending URL: ", url


        site='http://sci-hub.cc/'
        data = urllib.urlencode({'request': url})

        print data
        results = urllib2.urlopen(site, data) #this is where it fails


        with open("results.html", "w") as f:
            f.write(results.read())

        webbrowser.open_new("results.html")


    except:
        print "**********************"
        print "No valid journal found for:"
        print title
        print "**********************"
        print "Continuing..."
        failed.append(title)
    continue

if len(failed)==0:
    print 'Complete'

else:
    print '*************************************'
    print 'The following titles did not download: '
    print '*************************************'
    print failed
    print "Please check that these are valid entries"

最佳答案

现在可以正常工作,我添加了“ User-Agent”标头,并重新标记了URLlib的内容。看来现在正在做什么。尝试和从网络上获取许多不同代码段的尝试和错误过程。希望老板不要问我今天取得的成就。有人应该创建一个论坛,让人们可以找到编码问题的答案。

'''Program to automatically find and download items from a bibliography or references list here are some journal papers in bibliographic format. Just copy the text to clipboard and run the script.

Ghaffour, N., T. M. Missimer and G. L. Amy (2013). "Technical review and evaluation of the economics of water desalination: Current and future challenges for better water supply sustainability." Desalination 309(0): 197-207.

Gutiérrez Ortiz, F. J., P. G. Aguilera and P. Ollero (2014). "Biogas desulfurization by adsorption on thermally treated sewage-sludge." Separation and Purification Technology 123(0): 200-213.

This program uses the 'scihub' website to obtain the full-text paper where
available, if no entry is found the paper is ignored and the failed downloads are listed at the end'''

    import scholarly
    import win32clipboard
    import urllib
    import urllib2
    import webbrowser
    import re


    '''Select and then copy the bibliography entries you want to download the
    papers for, python reads the clipboard'''
    win32clipboard.OpenClipboard()
    c = win32clipboard.GetClipboardData()
    win32clipboard.EmptyClipboard()

    '''Cleans up the text. removes end lines and double spaces etc.'''
    c = c.replace('\n', ' ')
    c = c.replace('\r', ' ')
    while c.find('  ') != -1:
        c = c.replace('  ', ' ')
    win32clipboard.SetClipboardText(c)
    win32clipboard.CloseClipboard()
    print "Working..."

    '''bit of regex to extract the title of the paper,
    IMPORTANT: bibliography has to be in
    author date format or you will need to revise this,
    at the moment it looks for date in brackets, then copies all the text until it
    reaches a full-stop, assuming that this is the paper title. If it is not, it
    will either fail or will be using inappropriate search terms.'''

    paper_info= re.findall(r"(\d{4}[a-z]*)([). ]+)([ \"])+([\w\s_():,-]*)(.)",c)
    print "Analysing titles"
    print "The following titles found:"
    print "*************************"
    list_of_titles= list()
    for i in paper_info:
        print '%s...' % (i[3][:50])
        Paper_title=str(i[3])
        list_of_titles.append(Paper_title)
    paper_number=0
    failed=list()
    for title in list_of_titles:
        try:
            search_query = scholarly.search_pubs_query(title)

            info= (next(search_query))
            paper_number+=1
            print "Querying Google Scholar"
            print "**********************"
            print "Looking up paper title:"
            print title
            print "**********************"

            url=info.bib['url']
            print "Journal URL found "
            print url
            #url=next(search_query)
            print "Sending URL: ", url

            site='http://sci-hub.cc/'

            r = urllib2.Request(url=site)
            r.add_header('User-Agent','Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11')
            r.add_data(urllib.urlencode({'request': url}))
            res= urllib2.urlopen(r)



            with open("results.html", "w") as f:
                f.write(res.read())


            webbrowser.open_new("results.html")
            if not paper_number<= len(list_of_titles):
                print "Next title"
            else:
                continue

        except Exception as e:
            print repr(e)
            paper_number+=1
            print "**********************"
            print "No valid journal found for:"
            print title
            print "**********************"
            print "Continuing..."
            failed.append(title)
        continue

    if len(failed)==0:
        print 'Complete'

    else:
        print '*************************************'
        print 'The following titles did not download: '
        print '*************************************'
        print failed
        print "Please check that these are valid entries"

10-08 18:00