作为研究的一部分,我正在尝试使用不同的并行计算语言来实现Totient之和(Euler's Totient),而老实说,我在MapReduce方面颇为挣扎。
主要目标是针对运行时,效率等进行基准测试...
我的代码现在正在运行,并且我得到了正确的输出,但是它非常慢,我想知道为什么。
是因为我的实现,还是因为Hadoop MadReduce不是为此目的而创建的。
我还实现了一个组合器,因为从我阅读的内容来看,它应该优化代码,但事实并非如此。
很抱歉,这个问题看起来很愚蠢,但是我在互联网上找不到任何东西,我厌倦了尝试一切而没有任何结果。
我的输入文件的取值范围是1到15000
1 2 3 4 5 6 ... 14998 14999 15000
我正在32个节点的集群上工作,我的目标是让每个节点都对我的范围(合并器)的一部分进行计算,然后将归约器中所有合并器的“子和”求和。
import java.io.IOException;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.Reducer;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
public class NewTotient {
public static long hcf(long x, long y)
{
long t;
while (y != 0) {
t = x % y;
x = y;
y = t;
}
return x;
}
public static boolean relprime(long x, long y)
{
return hcf(x, y) == 1;
}
public static long euler(long n)
{
long length, i;
length = 0;
for (i = 1; i < n; i++)
if (relprime(n, i))
length++;
return length;
}
public static class TotientMapper extends Mapper<LongWritable, Text, Text, IntWritable>{
private final static IntWritable one = new IntWritable(1);
private Text word = new Text();
protected void map(LongWritable key, Text value, Context context) throws IOException, InterruptedException {
for (String val : value.toString().split(" ")) {
context.write(new Text(), new IntWritable(Integer.valueOf(val)));
}
}
}
public static class TotientCombiner extends Reducer<Text,IntWritable,Text,IntWritable> {
//private IntWritable result = new IntWritable();
protected void reduce(Text key, Iterable<IntWritable> values, Context context)throws IOException, InterruptedException {
int sum = 0;
for (IntWritable val : values) {
sum += NewTotient.euler(val.get());
}
}
}
public static class TotientReducer extends Reducer<Text,IntWritable,Text,IntWritable> {
//private IntWritable result = new IntWritable();
protected void reduce(Text key, Iterable<IntWritable> values, Context context)throws IOException, InterruptedException {
int sum = 1;
for (IntWritable val : values) {
sum += val.get();
}
context.write(null, new IntWritable(sum));
}
}
public static void main(String[] args) throws Exception {
Configuration conf = new Configuration();
System.out.println("\n\n__________________________________________________________\n"+"Starting Job\n"+"__________________________________________________________\n\n");
final long startTime = System.currentTimeMillis();
Job job = Job.getInstance(conf, "Sum of Totient");
job.setJarByClass(NewTotient.class);
job.setMapperClass(TotientMapper.class);
job.setCombinerClass(TotientCombiner.class);
job.setReducerClass(TotientReducer.class);
job.setOutputKeyClass(Text.class);
job.setOutputValueClass(IntWritable.class);
//job.setOutputKeyClass(Text.class);
//job.setOutputValueClass(Text.class);
FileInputFormat.addInputPath(job, new Path(args[0]));
FileOutputFormat.setOutputPath(job, new Path(args[1]));
job.waitForCompletion(true);
final double duration = (System.currentTimeMillis() - startTime)/1000.0;
System.out.println("\n\n__________________________________________________________\n"+"Job Finished in " + duration + " seconds\n"+"__________________________________________________________\n\n");
System.exit(job.waitForCompletion(true) ? 0 : 1);
}
}
如果可以帮助我,这是我的数据集输出从0到10的输出(所以基本上我只是在计算10个第一个Totient的总和:
__________________________________________________________
Starting Job
__________________________________________________________
2018-04-02 06:09:27,583 INFO client.RMProxy: Connecting to ResourceManager at bwlf32/137.195.143.132:33312
2018-04-02 06:09:28,377 WARN mapreduce.JobResourceUploader: Hadoop command-line option parsing not performed. Implement the Tool interface and execute your application with ToolRunner to remedy this.
2018-04-02 06:09:28,423 INFO mapreduce.JobResourceUploader: Disabling Erasure Coding for path: /tmp/hadoop-yarn/staging/jo20/.staging/job_1522471222360_0016
2018-04-02 06:09:28,775 INFO input.FileInputFormat: Total input files to process : 1
2018-04-02 06:09:29,029 INFO mapreduce.JobSubmitter: number of splits:1
2018-04-02 06:09:29,101 INFO Configuration.deprecation: yarn.resourcemanager.system-metrics-publisher.enabled is deprecated. Instead, use yarn.system-metrics-publisher.enabled
2018-04-02 06:09:29,288 INFO mapreduce.JobSubmitter: Submitting tokens for job: job_1522471222360_0016
2018-04-02 06:09:29,290 INFO mapreduce.JobSubmitter: Executing with tokens: []
2018-04-02 06:09:29,538 INFO conf.Configuration: resource-types.xml not found
2018-04-02 06:09:29,539 INFO resource.ResourceUtils: Unable to find 'resource-types.xml'.
2018-04-02 06:09:29,628 INFO impl.YarnClientImpl: Submitted application application_1522471222360_0016
2018-04-02 06:09:29,687 INFO mapreduce.Job: The url to track the job: http://bwlf32:33314/proxy/application_1522471222360_0016/
2018-04-02 06:09:29,688 INFO mapreduce.Job: Running job: job_1522471222360_0016
2018-04-02 06:09:37,849 INFO mapreduce.Job: Job job_1522471222360_0016 running in uber mode : false
2018-04-02 06:09:37,852 INFO mapreduce.Job: map 0% reduce 0%
2018-04-02 06:09:44,960 INFO mapreduce.Job: map 100% reduce 0%
2018-04-02 06:09:52,008 INFO mapreduce.Job: map 100% reduce 100%
2018-04-02 06:09:52,022 INFO mapreduce.Job: Job job_1522471222360_0016 completed successfully
2018-04-02 06:09:52,178 INFO mapreduce.Job: Counters: 53
File System Counters
FILE: Number of bytes read=6
FILE: Number of bytes written=414497
FILE: Number of read operations=0
FILE: Number of large read operations=0
FILE: Number of write operations=0
HDFS: Number of bytes read=123
HDFS: Number of bytes written=0
HDFS: Number of read operations=8
HDFS: Number of large read operations=0
HDFS: Number of write operations=2
Job Counters
Launched map tasks=1
Launched reduce tasks=1
Rack-local map tasks=1
Total time spent by all maps in occupied slots (ms)=9126
Total time spent by all reduces in occupied slots (ms)=9688
Total time spent by all map tasks (ms)=4563
Total time spent by all reduce tasks (ms)=4844
Total vcore-milliseconds taken by all map tasks=4563
Total vcore-milliseconds taken by all reduce tasks=4844
Total megabyte-milliseconds taken by all map tasks=1168128
Total megabyte-milliseconds taken by all reduce tasks=1240064
Map-Reduce Framework
Map input records=1
Map output records=10
Map output bytes=50
Map output materialized bytes=6
Input split bytes=102
Combine input records=10
Combine output records=0
Reduce input groups=0
Reduce shuffle bytes=6
Reduce input records=0
Reduce output records=0
Spilled Records=0
Shuffled Maps =1
Failed Shuffles=0
Merged Map outputs=1
GC time elapsed (ms)=157
CPU time spent (ms)=2220
Physical memory (bytes) snapshot=507772928
Virtual memory (bytes) snapshot=3889602560
Total committed heap usage (bytes)=347078656
Peak Map Physical memory (bytes)=306073600
Peak Map Virtual memory (bytes)=1945808896
Peak Reduce Physical memory (bytes)=201699328
Peak Reduce Virtual memory (bytes)=1943793664
Shuffle Errors
BAD_ID=0
CONNECTION=0
IO_ERROR=0
WRONG_LENGTH=0
WRONG_MAP=0
WRONG_REDUCE=0
File Input Format Counters
Bytes Read=21
File Output Format Counters
Bytes Written=0
__________________________________________________________
Job Finished in 26.225 seconds
__________________________________________________________
2018-04-02 06:09:52,182 INFO mapreduce.Job: Running job: job_1522471222360_0016
2018-04-02 06:09:52,188 INFO mapreduce.Job: Job job_1522471222360_0016 running in uber mode : false
2018-04-02 06:09:52,188 INFO mapreduce.Job: map 100% reduce 100%
2018-04-02 06:09:52,193 INFO mapreduce.Job: Job job_1522471222360_0016 completed successfully
2018-04-02 06:09:52,201 INFO mapreduce.Job: Counters: 53
File System Counters
FILE: Number of bytes read=6
FILE: Number of bytes written=414497
FILE: Number of read operations=0
FILE: Number of large read operations=0
FILE: Number of write operations=0
HDFS: Number of bytes read=123
HDFS: Number of bytes written=0
HDFS: Number of read operations=8
HDFS: Number of large read operations=0
HDFS: Number of write operations=2
Job Counters
Launched map tasks=1
Launched reduce tasks=1
Rack-local map tasks=1
Total time spent by all maps in occupied slots (ms)=9126
Total time spent by all reduces in occupied slots (ms)=9688
Total time spent by all map tasks (ms)=4563
Total time spent by all reduce tasks (ms)=4844
Total vcore-milliseconds taken by all map tasks=4563
Total vcore-milliseconds taken by all reduce tasks=4844
Total megabyte-milliseconds taken by all map tasks=1168128
Total megabyte-milliseconds taken by all reduce tasks=1240064
Map-Reduce Framework
Map input records=1
Map output records=10
Map output bytes=50
Map output materialized bytes=6
Input split bytes=102
Combine input records=10
Combine output records=0
Reduce input groups=0
Reduce shuffle bytes=6
Reduce input records=0
Reduce output records=0
Spilled Records=0
Shuffled Maps =1
Failed Shuffles=0
Merged Map outputs=1
GC time elapsed (ms)=157
CPU time spent (ms)=2220
Physical memory (bytes) snapshot=507772928
Virtual memory (bytes) snapshot=3889602560
Total committed heap usage (bytes)=347078656
Peak Map Physical memory (bytes)=306073600
Peak Map Virtual memory (bytes)=1945808896
Peak Reduce Physical memory (bytes)=201699328
Peak Reduce Virtual memory (bytes)=1943793664
Shuffle Errors
BAD_ID=0
CONNECTION=0
IO_ERROR=0
WRONG_LENGTH=0
WRONG_MAP=0
WRONG_REDUCE=0
File Input Format Counters
Bytes Read=21
File Output Format Counters
Bytes Written=0
并且在Java中使用我的顺序代码会更快:
real 0m0.512s
user 0m0.279s
sys 0m0.142s
需要说明的是,我必须使用这种计算方式,因为它的速度足够慢,无法在不同系统之间进行有趣的比较,而且即使我知道有计算方法,也无法使用更智能的计算方法来提高系统速度。计算所有素数及其倍数并从n中减去此计数以获得上位函数值的想法(素数和素数的倍数的gcd不会为1)。
最佳答案
在这里,您在一行中提供了来自文件的输入。映射器中使用的键是换行符,因此,由于只有一行,它将由一个映射任务处理,因此不会并行处理输入。
您可以做的一件事是在新行中提供每个输入数字而不是空格,并相应地更改映射器。
而且合并器在这里没有多大意义,因为您没有在 map 输出中使用不同的键