我正在尝试计算k原型算法输出的轮廓索引以聚类混合特征数据集。我收到ValueError:无法将字符串转换为float:'lisans'作为错误,即使我仅执行k-prototypes算法时我的代码工作正常。我的输入是一个excel文件,单元格中没有空格或缩进。错误如下:
File "C:\Users\...\Continuum\anaconda3\lib\site-packages\sklearn\utils\validation.py", line 433, in check_array
array = np.array(array, dtype=dtype, order=order, copy=copy)
ValueError: could not convert string to float: 'lisans'
在这里validation.py给出了错误:
另外,每当我更改excel文件中列的位置时,用以前给出错误的旧列的位置替换的新列也会在同一位置产生错误,无论单元格中的文字是什么。
我也尝试创建一个新的excel文件并使用了该文件,但我又失败了。这是下面的代码:
#silhouette score index calculation
import matplotlib.cm as cm
from sklearn.metrics import silhouette_samples, silhouette_score
range_n_clusters = [2, 3, 4, 5, 6, 7]
for n_clusters in range_n_clusters:
# Create a subplot with 1 row and 2 columns
fig, (ax1, ax2) = plt.subplots(1, 2)
fig.set_size_inches(18, 7)
# The 1st subplot is the silhouette plot
# The silhouette coefficient can range from -1, 1 but in this example all
# lie within [-0.1, 1]
ax1.set_xlim([-0.1, 1])
# The (n_clusters+1)*10 is for inserting blank space between silhouette
# plots of individual clusters, to demarcate them clearly.
ax1.set_ylim([0, len(X) + (n_clusters + 1) * 10])
# Initialize the clusterer with n_clusters value and a random generator
# seed of 10 for reproducibility.
clusterer = KPrototypes(n_clusters=n_clusters, init = 'Cao', verbose = 2)
cluster_labels = clusterer.fit_predict(X, categorical=[0, 8, 9])
# The silhouette_score gives the average value for all the samples.
# This gives a perspective into the density and separation of the formed
# clusters
silhouette_avg = silhouette_score(X, cluster_labels)
print("For n_clusters =", n_clusters,
"The average silhouette_score is :", silhouette_avg)
# Compute the silhouette scores for each sample
sample_silhouette_values = silhouette_samples(X, cluster_labels)
y_lower = 10
for i in range(n_clusters):
# Aggregate the silhouette scores for samples belonging to
# cluster i, and sort them
ith_cluster_silhouette_values = \
sample_silhouette_values[cluster_labels == i]
ith_cluster_silhouette_values.sort()
size_cluster_i = ith_cluster_silhouette_values.shape[0]
y_upper = y_lower + size_cluster_i
color = cm.spectral(float(i) / n_clusters)
ax1.fill_betweenx(np.arange(y_lower, y_upper),
0, ith_cluster_silhouette_values,
facecolor=color, edgecolor=color, alpha=0.7)
# Label the silhouette plots with their cluster numbers at the middle
ax1.text(-0.05, y_lower + 0.5 * size_cluster_i, str(i))
# Compute the new y_lower for next plot
y_lower = y_upper + 10 # 10 for the 0 samples
ax1.set_title("The silhouette plot for the various clusters.")
ax1.set_xlabel("The silhouette coefficient values")
ax1.set_ylabel("Cluster label")
# The vertical line for average silhouette score of all the values
ax1.axvline(x=silhouette_avg, color="red", linestyle="--")
ax1.set_yticks([]) # Clear the yaxis labels / ticks
ax1.set_xticks([-0.1, 0, 0.2, 0.4, 0.6, 0.8, 1])
# 2nd Plot showing the actual clusters formed
colors = cm.spectral(cluster_labels.astype(float) / n_clusters)
ax2.scatter(X[:, 0], X[:, 1], marker='.', s=30, lw=0, alpha=0.7,
c=colors, edgecolor='k')
# Labeling the clusters
centers = clusterer.cluster_centers_
# Draw white circles at cluster centers
ax2.scatter(centers[:, 0], centers[:, 1], marker='o',
c="white", alpha=1, s=200, edgecolor='k')
for i, c in enumerate(centers):
ax2.scatter(c[0], c[1], marker='$%d$' % i, alpha=1,
s=50, edgecolor='k')
ax2.set_title("The visualization of the clustered data.")
ax2.set_xlabel("Feature space for the 1st feature")
ax2.set_ylabel("Feature space for the 2nd feature")
plt.suptitle(("Silhouette analysis for KMeans clustering on sample data "
"with n_clusters = %d" % n_clusters),
fontsize=14, fontweight='bold')
plt.show()
此轮廓分数代码也可以与其他数据集很好地工作,而不会出错。有谁能解决这个问题? (我在复制代码时遇到了一些问题,因此通常缩进在源代码中是正确的)
最佳答案
在silhouette_score
调用中,您将计算所有成对的欧几里得距离。
如果您的单元格包含字符串值"lisans"
,则不可能。
您可能需要首先计算成对的距离矩阵,然后使用metric="precomputed"
。