下面的代码可以工作，但是效率是使用（linux）管道将解压缩的数据提供给（修改过的）程序时的两倍。我需要一个稳定的流在程序中，我可以继续分裂\n。有没有办法用（字符串？）流还是其他什么把戏？
int main(int argc, char *argv[]) {
static const int unzipBufferSize = 8192;
long long int counter = 0;
int i = 0, p = 0, n = 0;
int offset = 0;
char *end = NULL;
char *begin = NULL;
unsigned char unzipBuffer[unzipBufferSize];
unsigned int unzippedBytes;
char * inFileName = argv[1];
char buffer[200];
buffer[0] = '\0';
bool breaker = false;
char pch[4][200];
Read *aRead = new Read;
gzFile inFileZ;
inFileZ = gzopen(inFileName, "rb");
while (true) {
unzippedBytes = gzread(inFileZ, unzipBuffer, unzipBufferSize);
if (unzippedBytes > 0) {
unzipBuffer[unzippedBytes] = '\0'; //put a 0-char after the total buffer
begin = (char*) &unzipBuffer[0]; // point to the address of the first char
do {
end = strchr(begin,(int)'\n'); //find the end of line
if (end != NULL) *(end) = '\0'; // put 0-char to use it as a c-string
pch[p][0] = '\0'; \\ put a 0-char to be able to strcat
if (strlen(buffer) > 0) { // if buffer from previous iteration contains something
strcat(pch[p], buffer); // cat it to the p-th pch
buffer[0] = '\0'; \\ set buffer to null-string or ""
}
strcat(pch[p], begin); // put begin (or rest of line in case there was a buffer into p-th pch
if (end != NULL) { // see if it already points to something
begin = end+1; // if so, advance begin to old end+1
p++;
}
if(p>3) { // a 'read' contains 4 lines, so if p>3
strcat(aRead->bases,pch[1]); // we use line 2 and 4 as
strcat(aRead->scores,pch[3]); // bases and scores
//do things with the reads
aRead->bases[0] = '\0'; //put them back to 0-char
aRead->scores[0] = '\0';
p = 0; // start counting next 4 lines
}
}
while (end != NULL );
strcat(buffer,pch[p]); //move the left-over of unzipBuffer to buffer
}
else {
break; // when no unzippedBytes, exit the loop
}
}
最佳答案
您的主要问题可能是标准的C字符串库。
使用strxxx()函数时，每次调用都要在整个缓冲区中迭代多次，首先是针对strchr()，然后是针对strlen()，然后是针对每个strcat()调用。
使用标准库是件好事，但在这里，它的效率很低。
如果你能想出一些更简单的方法，只触及每个字符一次，比如（代码只是为了显示原理，不要期望它起作用）：
do
{
do
{
*tp++ = *sp++;
} while (sp < buffer_end && *sp != '\n');
/* new line, do whatever it requires */
...
/* reset tp to beginning of buffer */
} while (sp < buffer_end);